5BNH

Crystal structure of the HLTF HIRAN domain with a ssDNA fragment


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Co-crystal structure of the HLTF HIRAN domain with a ssDNA fragment

Neculai, D.Walker, J.R.Weigelt, J.Bountra, C.Edwards, A.M.Arrowsmith, C.H.Dhe-Paganon, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Helicase-like transcription factor
A, D
123Homo sapiensMutation(s): 0 
Gene Names: HLTF (HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1)
EC: 2.3.2.27, 3.6.4.-
Find proteins for Q14527 (Homo sapiens)
Go to Gene View: HLTF
Go to UniProtKB:  Q14527
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*(GD)P*GP*TP*G)-3')B3synthetic construct
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*(TD)P*TP*G)-3')C3synthetic construct
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

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Download CCD File 
D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.165 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 48.469α = 90.00
b = 50.117β = 90.00
c = 102.763γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata scaling
XDSdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-05-25
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Source and taxonomy