5BN6

Crystal Structure of Frutalin from Artocarpus incisa in complex with galactose

• PDB DOI: https://doi.org/10.2210/pdb5BN6/pdb

• Classification: SUGAR BINDING PROTEIN
• Organism(s): Artocarpus heterophyllus
• Mutation(s): No 


• Deposited: 2015-05-25 Released: 2016-06-08 
• Deposition Author(s): Vieira Neto, A.E., Pereira, H.M., Moreno, F.B.M.B., Moreira, A.C.O.M., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.197 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 

Literature

Crystal Structure of Frutalin from Artocarpus incisa in complex with galactose

Vieira Neto, A.E., Pereira, H.M., Moreno, F.B.M.B., Moreira, A.C.O.M., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Hetero 8-mer - A4B4 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 8-mer - A4B3C1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 68.74 kDa 
• Atom Count: 5,577 
• Modelled Residue Count: 602 
• Deposited Residue Count: 628 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Jacalin	A, C [auth B], E [auth C], G [auth D]	19	Artocarpus heterophyllus	Mutation(s): 0
UniProt
Find proteins for Q38720 (Artocarpus heterophyllus) Explore Q38720  Go to UniProtKB:  Q38720

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Jacalin	B [auth E], D [auth F], F [auth G], H	138	Artocarpus heterophyllus	Mutation(s): 0
UniProt
Find proteins for Q38720 (Artocarpus heterophyllus) Explore Q38720  Go to UniProtKB:  Q38720

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GAL	I [auth E], J [auth F], K [auth G], L [auth H]	beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 0.197 
• R-Value Work: 0.164 
• R-Value Observed: 0.166 
• Space Group: I 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.926	α = 90
b = 74.606	β = 96.79
c = 119.042	γ = 90

Software Package:

Software Name	Purpose
d*TREK	data scaling
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-06-08 
Deposition Author(s): Vieira Neto, A.E., Pereira, H.M., Moreno, F.B.M.B., Moreira, A.C.O.M., Lobo, M.D.P., Sousa, F.D., Grangeiro, T.B., Moreira, R.A.

Revision History  

• Version 1.0: 2016-06-08
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Derived calculations, Refinement description
• Version 1.2: 2020-07-29
  Type: Remediation
  Reason: Carbohydrate remediation
  Changes: Data collection, Derived calculations, Structure summary
• Version 1.3: 2023-09-27
  Changes: Data collection, Database references, Refinement description, Structure summary