Crystal structure of truncated Pyrococcus furiosus L-asparaginase with peptide
Sharma, P., Tomar, R., Nath, S.K., Kundu, B., AshishTo be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
L-asparaginase | A | 178 | Pyrococcus furiosus DSM 3638 | Mutation(s): 0  Gene Names: PF2047 EC: 3.5.1.1 | ![]() |
UniProt | |||||
Find proteins for Q8TZE8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8TZE8  Go to UniProtKB:  Q8TZE8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8TZE8 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
L-asparaginase | B | 127 | Pyrococcus furiosus DSM 3638 | Mutation(s): 0  Gene Names: PF2047 EC: 3.5.1.1 | ![]() |
UniProt | |||||
Find proteins for Q8TZE8 (Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)) Explore Q8TZE8  Go to UniProtKB:  Q8TZE8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8TZE8 | ||||
Protein Feature ViewExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
LEU-VAL-VAL-ASN | C, D [auth E] | 4 | Pyrococcus furiosus | Mutation(s): 0  | ![]() |
Protein Feature ViewExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ASP Query on ASP | E [auth A] | ASPARTIC ACID C4 H7 N O4 CKLJMWTZIZZHCS-REOHCLBHSA-N | Ligand Interaction | ||
GOL Query on GOL | I [auth A], J [auth A], K [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
IPA Query on IPA | G [auth A], H [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N | Ligand Interaction | ||
CL Query on CL | F [auth A], L [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | Ligand Interaction |
Length ( Å ) | Angle ( ˚ ) |
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a = 91.31 | α = 90 |
b = 91.31 | β = 90 |
c = 186.971 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
iMOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |