5B01 | pdb_00005b01

Structure of a prenyltransferase in its unbound form

PDB DOI: https://doi.org/10.2210/pdb5B01/pdb

Classification: TRANSFERASE
Organism(s): Streptomyces viridosporus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-10-27 Released: 2016-11-02
Deposition Author(s): Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.45 Å
R-Value Free:
0.261 (Depositor), 0.260 (DCC)
R-Value Work:
0.225 (Depositor), 0.220 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure and function of a prenyltransferase

Zhang, L., Chen, C.-C., Ko, T.-P., Guo, R.-T., Oldfield, E.O.

To be published.

Macromolecule Content

Total Structure Weight: 322.58 kDa
Atom Count: 20,030
Modeled Residue Count: 2,620
Deposited Residue Count: 2,940
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MoeN5	A, B, C, D, E A, B, C, D, E, F, G, H, I, J	294	Streptomyces viridosporus	Mutation(s): 0 Gene Names: moeN5
UniProt
Find proteins for A0A010 (Streptomyces viridosporus) Explore A0A010 Go to UniProtKB: A0A010
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A010
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.45 Å
R-Value Free: 0.261 (Depositor), 0.260 (DCC)
R-Value Work: 0.225 (Depositor), 0.220 (DCC)

Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.604	α = 90
b = 106.604	β = 90
c = 310.713	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-11-02

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-11-02
Type: Initial release
Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.