5AYK

Crystal structure of ERdj5 form I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation

Maegawa, K.Watanabe, S.Okumura, M.Noi, K.Inoue, M.Ushioda, R.Ogura, T.Nagata, K.Inaba, K.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DnaJ homolog subfamily C member 10783Mus musculusMutation(s): 10 
Gene Names: Dnajc10Erdj5Jpdi
EC: 1.8.4
UniProt & NIH Common Fund Data Resources
Find proteins for Q9DC23 (Mus musculus)
Explore Q9DC23 
Go to UniProtKB:  Q9DC23
IMPC:  MGI:1914111
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9DC23
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.216 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 91.99α = 90
b = 52.97β = 113.54
c = 92.9γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-02-15
    Type: Initial release
  • Version 1.1: 2020-02-26
    Changes: Data collection
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Refinement description, Structure summary
  • Version 1.3: 2024-10-16
    Changes: Structure summary