5ARM | pdb_00005arm

APO-CSP3 (COPPER STORAGE PROTEIN 3) FROM METHYLOSINUS

PDB DOI: https://doi.org/10.2210/pdb5ARM/pdb

Classification: COPPER-BINDING PROTEIN
Organism(s): Methylosinus trichosporium OB3b
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-09-25 Released: 2016-10-12
Deposition Author(s): Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.19 Å
R-Value Free:
0.171 (Depositor), 0.176 (DCC)
R-Value Work:
0.137 (Depositor), 0.146 (DCC)
R-Value Observed:
0.138 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Novel Cytosolic Copper Storage Proteins

Vita, N., Landolfi, G., Basle, A., Platsaki, S., Waldron, K., Dennison, C.

To be published.

Macromolecule Content

Total Structure Weight: 14.55 kDa
Atom Count: 1,047
Modeled Residue Count: 127
Deposited Residue Count: 133
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CSP3	A	133	Methylosinus trichosporium OB3b	Mutation(s): 0
UniProt
Find proteins for A0A1I9GEP2 (Methylosinus trichosporium (strain ATCC 35070 / NCIMB 11131 / UNIQEM 75 / OB3b)) Explore A0A1I9GEP2 Go to UniProtKB: A0A1I9GEP2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1I9GEP2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.19 Å
R-Value Free: 0.171 (Depositor), 0.176 (DCC)
R-Value Work: 0.137 (Depositor), 0.146 (DCC)
R-Value Observed: 0.138 (Depositor)

Space Group: C 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.17	α = 90
b = 105.5	β = 90
c = 45.07	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-10-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-10-12
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.