5A9R | pdb_00005a9r

Apo form of Imine reductase from Amycolatopsis orientalis

PDB DOI: https://doi.org/10.2210/pdb5A9R/pdb

Classification: OXIDOREDUCTASE
Organism(s): Amycolatopsis orientalis
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-07-22 Released: 2016-06-01
Deposition Author(s): Man, H., Aleku, G., Turner, N.J., Grogan, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.214 (Depositor), 0.226 (DCC)
R-Value Work:
0.181 (Depositor), 0.194 (DCC)
R-Value Observed:
0.182 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Stereoselectivity and Structural Characterization of an Imine Reductase (Ired) from Amycolatopsis Orientalis

Aleku, G.A., Man, H., France, S.P., Leipold, F., Hussain, S., Toca-Gonzalez, L., Marchington, R., Hart, S., Turkenburg, J.P., Grogan, G., Turner, N.J.

(2016) ACS Catal 6: 3880

DOI: https://doi.org/10.1021/ACSCATAL.6B00782

Macromolecule Content

Total Structure Weight: 30.55 kDa
Atom Count: 2,197
Modeled Residue Count: 286
Deposited Residue Count: 290
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IMINE REDUCTASE	A	290	Amycolatopsis orientalis	Mutation(s): 0 EC: 1.5.1.48
UniProt
Find proteins for R4SNK4 (Amycolatopsis keratiniphila) Explore R4SNK4 Go to UniProtKB: R4SNK4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	R4SNK4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.214 (Depositor), 0.226 (DCC)
R-Value Work: 0.181 (Depositor), 0.194 (DCC)
R-Value Observed: 0.182 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.58	α = 90
b = 89.62	β = 90
c = 91.48	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2016-06-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-06-01
Type: Initial release
Version 1.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.