Cryo-EM single particle 3D reconstruction of the native conformation of E. coli alpha-2-macroglobulin (ECAM)

Experimental Data Snapshot

  • Resolution: 16.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report

This is version 1.2 of the entry. See complete history


Structural and Functional Insights Into Escherichia Coli Alpha2- Macroglobulin Endopeptidase Snap-Trap Inhibition.

Garcia-Ferrer, I.Arede, P.Gomez-Blanco, J.Luque, D.Duquerroy, S.Caston, J.R.Goulas, T.Gomis-Ruth, F.X.

(2015) Proc Natl Acad Sci U S A 112: 8290

  • DOI: https://doi.org/10.1073/pnas.1506538112
  • Primary Citation of Related Structures:  
    4ZIQ, 4ZIU, 4ZJG, 4ZJH, 5A42

  • PubMed Abstract: 

    The survival of commensal bacteria requires them to evade host peptidases. Gram-negative bacteria from the human gut microbiome encode a relative of the human endopeptidase inhibitor, α2-macroglobulin (α2M). Escherichia coli α2M (ECAM) is a ∼ 180-kDa multidomain membrane-anchored pan-peptidase inhibitor, which is cleaved by host endopeptidases in an accessible bait region. Structural studies by electron microscopy and crystallography reveal that this cleavage causes major structural rearrangement of more than half the 13-domain structure from a native to a compact induced form. It also exposes a reactive thioester bond, which covalently traps the peptidase. Subsequently, peptidase-laden ECAM is shed from the membrane and may dimerize. Trapped peptidases are still active except against very large substrates, so inhibition potentially prevents damage of large cell envelope components, but not host digestion. Mechanistically, these results document a novel monomeric "snap trap."

  • Organizational Affiliation

    Unité de Virologie Structurale, Département de Virologie and CNRS Unité de Recherche Associée 3015, Institut Pasteur, 75724 Paris Cedex 15, France; Departement de Biologie, Faculté des Sciences d'Orsay, Université Paris-Sud, 91405 Orsay, France.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
UNCHARACTERIZED LIPOPROTEIN YFHM1,614Escherichia coli K-12Mutation(s): 0 
Gene Names: yfhMb2520JW2504
Find proteins for P76578 (Escherichia coli (strain K12))
Explore P76578 
Go to UniProtKB:  P76578
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP76578
Sequence Annotations
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Resolution: 16.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion

Structure Validation

View Full Validation Report

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-07-29
    Type: Initial release
  • Version 1.1: 2015-08-19
    Changes: Database references
  • Version 1.2: 2017-08-23
    Changes: Data collection, Refinement description