5A22

Structure of the L protein of vesicular stomatitis virus from electron cryomicroscopy


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of the L Protein of Vesicular Stomatitis Virus from Electron Cryomicroscopy.

Liang, B.Li, Z.Jenni, S.Rahmeh, A.A.Morin, B.M.Grant, T.Grigorieff, N.Harrison, S.C.Whelan, S.P.

(2015) Cell 162: 314

  • DOI: 10.1016/j.cell.2015.06.018

  • PubMed Abstract: 
  • The large (L) proteins of non-segmented, negative-strand RNA viruses, a group that includes Ebola and rabies viruses, catalyze RNA-dependent RNA polymerization with viral ribonucleoprotein as template, a non-canonical sequence of capping and methylat ...

    The large (L) proteins of non-segmented, negative-strand RNA viruses, a group that includes Ebola and rabies viruses, catalyze RNA-dependent RNA polymerization with viral ribonucleoprotein as template, a non-canonical sequence of capping and methylation reactions, and polyadenylation of viral messages. We have determined by electron cryomicroscopy the structure of the vesicular stomatitis virus (VSV) L protein. The density map, at a resolution of 3.8 Å, has led to an atomic model for nearly all of the 2109-residue polypeptide chain, which comprises three enzymatic domains (RNA-dependent RNA polymerase [RdRp], polyribonucleotidyl transferase [PRNTase], and methyltransferase) and two structural domains. The RdRp resembles the corresponding enzymatic regions of dsRNA virus polymerases and influenza virus polymerase. A loop from the PRNTase (capping) domain projects into the catalytic site of the RdRp, where it appears to have the role of a priming loop and to couple product elongation to large-scale conformational changes in L.


    Organizational Affiliation

    Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 20115, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 20115, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
VESICULAR STOMATITIS VIRUS L POLYMERASE
A
2109Vesicular stomatitis Indiana virus (strain San Juan)Mutation(s): 0 
Gene Names: L
Find proteins for P03523 (Vesicular stomatitis Indiana virus (strain San Juan))
Go to UniProtKB:  P03523
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.8 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-19
    Type: Initial release
  • Version 1.1: 2017-08-23
    Type: Data collection, Refinement description
  • Version 1.2: 2019-04-24
    Type: Data collection, Source and taxonomy