5W7L

Structure of Campylobacter concisus PglC I57M/Q175M variant

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.260 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history. 


Literature

Membrane association of monotopic phosphoglycosyl transferase underpins function.

Ray, L.C., Das, D., Entova, S., Lukose, V., Lynch, A.J., Imperiali, B., Allen, K.N.

(2018) Nat Chem Biol 14: 538-541

  • DOI: 10.1038/s41589-018-0054-z
  • Structures With Same Primary Citation

  • PubMed Abstract: 

    • Polyprenol phosphate phosphoglycosyl transferases (PGTs) catalyze the first membrane-committed step in assembly of essential glycoconjugates. Currently there is no structure-function information to describe how monotopic PGTs coordinate the reaction ...

    Polyprenol phosphate phosphoglycosyl transferases (PGTs) catalyze the first membrane-committed step in assembly of essential glycoconjugates. Currently there is no structure-function information to describe how monotopic PGTs coordinate the reaction between membrane-embedded and soluble substrates. We describe the structure and mode of membrane association of PglC, a PGT from Campylobacter concisus. The structure reveals a unique architecture, provides mechanistic insight and identifies ligand-binding determinants for PglC and the monotopic PGT superfamily.

    Organizational Affiliation: 

    Department of Chemistry, Boston University, Boston, MA, USA. drkallen@bu.edu.



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N,N'-diacetylbacilliosaminyl-1-phosphate transferase
A, B
205Campylobacter concisus 13826Mutation(s): 2 
Gene Names: pglC, CCC13826_0450
EC: 2.7.8.36
Membrane protein
Mpstruc		Group: 
MONOTOPIC MEMBRANE PROTEINS		Sub Group: 
Phosphoglycosyl Transferases (PGT)		Protein: 
PglC phosphoglycosyl transferase, I57M/Q175M variant
Find proteins for A7ZET4 (Campylobacter concisus (strain 13826))
Go to UniProtKB:  A7ZET4
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PEF
Query on PEF
Download CCD File 
A, B
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
C37 H74 N O8 P
SLKDGVPOSSLUAI-PGUFJCEWSA-N		 Ligand Interaction
PG4
Query on PG4
Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N		 Ligand Interaction
PO4
Query on PO4
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K		 Ligand Interaction
MG
Query on MG
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.259 
  • R-Value Observed: 0.260 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.802α = 90
b = 70.802β = 90
c = 188.442γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
SHELXDphasing
PHENIXmodel building

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United StatesMCB1614608
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM-039334

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2018-05-30
    Changes: Data collection, Database references
  • Version 1.2: 2018-11-07
    Changes: Data collection, Database references
  • Version 1.3: 2019-02-20
    Changes: Author supporting evidence, Data collection
  • Version 1.4: 2019-11-27
    Changes: Author supporting evidence