5W7L

Structure of Campylobacter concisus PglC I57M/Q175M variant

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.259 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history. 

Literature

Membrane association of monotopic phosphoglycosyl transferase underpins function.

Ray, L.C., Das, D., Entova, S., Lukose, V., Lynch, A.J., Imperiali, B., Allen, K.N.

(2018) Nat. Chem. Biol. 14: 538-541


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N,N'-diacetylbacilliosaminyl-1-phosphate transferase
A, B
205Campylobacter concisus (strain 13826)Mutation(s): 2 
Gene Names: pglC
EC: 2.7.8.36
Membrane protein
mpstruct		Group: 
MONOTOPIC MEMBRANE PROTEINS		Sub Group: 
Phosphoglycosyl Transferases (PGT)		Protein: 
PglC phosphoglycosyl transferase, I57M/Q175M variant
Find proteins for A7ZET4 (Campylobacter concisus (strain 13826))
Go to UniProtKB:  A7ZET4
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4
Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
PEF
Query on PEF
Download SDF File 
Download CCD File 
A, B
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL
C37 H74 N O8 P
SLKDGVPOSSLUAI-PGUFJCEWSA-N
 Ligand Interaction
PG4
Query on PG4
Download SDF File 
Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG
Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.74 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.259 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 70.802α = 90.00
b = 70.802β = 90.00
c = 188.442γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHENIXmodel building
SHELXDphasing
PHENIXrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
National Science Foundation (United States)United StatesMCB1614608
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM-039334

Revision History 

  • Version 1.0: 2018-05-23
    Type: Initial release
  • Version 1.1: 2018-05-30
    Type: Data collection, Database references
  • Version 1.2: 2018-11-07
    Type: Data collection, Database references
  • Version 1.3: 2019-02-20
    Type: Author supporting evidence, Data collection