5JQO

Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 in Complex with (2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.549 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.286 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of a phospholipid transport complex

Lu, J.Chan, K.C.Zhai, Y.Fan, J.Sun, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mitochondrial distribution and morphology protein 35
A, C
86Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: MDM35
Find proteins for O60200 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  O60200
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein UPS1, mitochondrial
B, D
189Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: UPS1
Find proteins for Q05776 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  Q05776
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
44E
Query on 44E

Download SDF File 
Download CCD File 
B, D
(2R)-3-(phosphonooxy)propane-1,2-diyl dihexanoate
C15 H29 O8 P
SFZZRGHNPILUOD-CYBMUJFWSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.549 Å
  • R-Value Free: 0.327 
  • R-Value Work: 0.286 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 90.140α = 90.00
b = 90.140β = 90.00
c = 81.319γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000data processing
PHENIXphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
China--

Revision History 

  • Version 1.0: 2017-07-12
    Type: Initial release