5B69

CRYSTAL STRUCTURE OF GERANYLGERANYLGLYCERYL PHOSPHATE SYNTHASE COMPLEXED WITH AN G-1-P FROM THERMOPLASMA ACIDOPHILUM


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structure Of Geranylgeranylglyceryl Phosphate Synthase Complexed With An G-1-P From Thermoplasma Acidophilum

Nemoto, N.Miyazono, K.Kudo, N.Tanokura, M.Yamagishi, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Geranylgeranylglyceryl phosphate synthase
A, B
246Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)Mutation(s): 0 
EC: 2.5.1.41
Find proteins for Q9HJH3 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165))
Go to UniProtKB:  Q9HJH3
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
1GP
Query on 1GP

Download SDF File 
Download CCD File 
A, B
SN-GLYCEROL-1-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-VKHMYHEASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.213 
  • Space Group: P 65
Unit Cell:
Length (Å)Angle (°)
a = 105.644α = 90.00
b = 105.644β = 90.00
c = 142.503γ = 120.00
Software Package:
Software NamePurpose
SHELXSphasing
HKL-2000data scaling
HKLdata scaling
HKL-2000data reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan--

Revision History 

  • Version 1.0: 2017-07-19
    Type: Initial release
  • Version 1.1: 2017-10-18
    Type: Author supporting evidence