4ZOU | pdb_00004zou

Crystal structure of the BTB domain of SLX4

PDB DOI: https://doi.org/10.2210/pdb4ZOU/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-05-07 Released: 2016-05-04
Deposition Author(s): Wan, B., Chen, Y., Wu, J., Liu, Y., Lei, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.244 (Depositor), 0.240 (DCC)
R-Value Work:
0.201 (Depositor), 0.200 (DCC)
R-Value Observed:
0.203 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The BTB domain is both a structural and functional pivot of the SLX4-nuclease complex

Wan, B., Chen, Y., Wu, J., Liu, Y., Lei, M.

To be published.

Macromolecule Content

Total Structure Weight: 13.02 kDa
Atom Count: 938
Modeled Residue Count: 119
Deposited Residue Count: 119
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Structure-specific endonuclease subunit SLX4	A	119	Homo sapiens	Mutation(s): 0 Gene Names: SLX4, BTBD12, KIAA1784, KIAA1987
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IY92 (Homo sapiens) Explore Q8IY92 Go to UniProtKB: Q8IY92
PHAROS: Q8IY92 GTEx: ENSG00000188827
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8IY92
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.244 (Depositor), 0.240 (DCC)
R-Value Work: 0.201 (Depositor), 0.200 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.391	α = 90
b = 96.391	β = 90
c = 71.825	γ = 120

Software Package:

Software Name	Purpose
SCALEPACK	data reduction
PHENIX	phasing
PDB_EXTRACT	data extraction
SCALEPACK	data scaling
PHENIX	refinement
Coot	model building

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-05-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-05-04
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.