4Z7F | pdb_00004z7f

Crystal structure of FolT bound with folic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 
    0.356 (Depositor), 0.317 (DCC) 
  • R-Value Work: 
    0.293 (Depositor), 0.287 (DCC) 
  • R-Value Observed: 
    0.299 (Depositor) 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history

Literature

Structures of FolT in substrate-bound and substrate-released conformations reveal a gating mechanism for ECF transporters

Zhao, Q.Wang, C.C.Wang, C.Y.Guo, H.Bao, Z.H.Zhang, M.H.Zhang, P.

(2015) Nat Commun 6: 7661-7661

  • DOI: https://doi.org/10.1038/ncomms8661
  • Primary Citation Related Structures: 
    4Z7F

  • PubMed Abstract: 

    Energy-coupling factor (ECF) transporters are a new family of ABC transporters that consist of four subunits, two cytoplasmic ATPases EcfA and EcfA' and two transmembrane proteins namely EcfS for substrate-specific binding and EcfT for energy coupling. Here, we report the 3.2-Å resolution crystal structure of the EcfS protein of a folate ECF transporter from Enterococcus faecalis-EfFolT, a close homologue of FolT from Lactobacillus brevis-LbFolT. Structural and biochemical analyses reveal the residues constituting the folate-binding pocket and determining the substrate-binding specificity. Structural comparison of the folate-bound EfFolT with the folate-free LbFolT contained in the holotransporter complex discloses significant conformational change at the L1 loop, and reveals a gating mechanism of ECF transporters in which the L1 loop of EcfS acts as a gate in the substrate binding and release.


  • Organizational Affiliation
    • National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200032, China.

Macromolecule Content 

  • Total Structure Weight: 137.39 kDa 
  • Atom Count: 7,862 
  • Modeled Residue Count: 960 
  • Deposited Residue Count: 1,194 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Folate ECF transporter
A, B, C, D, E
A, B, C, D, E, F
199Enterococcus faecalis V583Mutation(s): 0 
Gene Names: EF_0940
Membrane Entity: Yes 
UniProt
Find proteins for Q837A3 (Enterococcus faecalis (strain ATCC 700802 / V583))
Explore Q837A3 
Go to UniProtKB:  Q837A3
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ837A3
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free:  0.356 (Depositor), 0.317 (DCC) 
  • R-Value Work:  0.293 (Depositor), 0.287 (DCC) 
  • R-Value Observed: 0.299 (Depositor) 
Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.752α = 90
b = 92.752β = 90
c = 183.445γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-07-29
    Type: Initial release
  • Version 1.1: 2015-08-05
    Changes: Database references
  • Version 1.2: 2023-11-08
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.3: 2024-10-23
    Changes: Structure summary