Macromolecule Content

Total Structure Weight: 23.42 kDa
Atom Count: 1,684
Modelled Residue Count: 196
Deposited Residue Count: 202
Unique protein chains: 1

4Z21

Crystal structure of ARNO Sec7

PDB DOI: 10.2210/pdb4Z21/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-03-28 Released: 2016-05-04
Deposition Author(s): Zhu, S.J., Yun, C.H.
Funding Organization(s): National Basic Research Program of China, National Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.212
R-Value Work: 0.192
R-Value Observed: 0.193

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Lack of evidence that CYTH2/ARNO functions as an intracellular EGFR activator

Anastasi, S., Zhu, S.J., Ballaro, C., Manca, S., Lamberti, D., Wang, L.J., Alema, S., Yun, C.H., Segatto, O.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cytohesin-2	A	202	Homo sapiens	Mutation(s): 0 Gene Names: CYTH2, ARNO, PSCD2, PSCD2L
UniProt & NIH Common Fund Data Resources
Find proteins for Q99418 (Homo sapiens) Explore Q99418 Go to UniProtKB: Q99418
PHAROS: Q99418
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q99418
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain B [auth A] SDF format, chain C [auth A] SDF format, chain D [auth A] MOL2 format, chain B [auth A] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A]	B [auth A], C [auth A], D [auth A]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.212
R-Value Work: 0.192
R-Value Observed: 0.193
Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.63	α = 90
b = 86.63	β = 90
c = 86.63	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Coot	model building
HKL-3000	data processing
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2016-05-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Basic Research Program of China	China	2012CB917202
National Science Foundation of China	China	31270769

Revision History (Full details and data files)

Version 1.0: 2016-05-04
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.