4YWE

Crystal Structure of a Putative Aldehyde Dehydrogenase from Burkholderia cenocepacia


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.200 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of a Putative Aldehyde Dehydrogenase from Burkholderia cenocepacia

Seattle Structural Genomics Center for Infectious Disease (SSGCID)Dranow, D.M.Lorimer, D.Edwards, T.E.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Putative aldehyde dehydrogenaseA, B, C, D, E, F, G, H487Burkholderia cenocepacia J2315Mutation(s): 0 
Gene Names: BCAL2623
Find proteins for B4E8B7 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610))
Explore B4E8B7 
Go to UniProtKB:  B4E8B7
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download Ideal Coordinates CCD File 
CA [auth G] , DA [auth G] , EA [auth G] , FA [auth G] , GA [auth G] , I [auth A] , JA [auth H] , KA [auth H] , 
CA [auth G],  DA [auth G],  EA [auth G],  FA [auth G],  GA [auth G],  I [auth A],  JA [auth H],  KA [auth H],  LA [auth H],  M [auth B],  MA [auth H],  N [auth B],  P [auth C],  Q [auth C],  X [auth F],  Y [auth F],  Z [auth F]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download Ideal Coordinates CCD File 
AA [auth F] , BA [auth F] , HA [auth G] , IA [auth G] , K [auth A] , NA [auth H] , O [auth B] , S [auth C] , 
AA [auth F],  BA [auth F],  HA [auth G],  IA [auth G],  K [auth A],  NA [auth H],  O [auth B],  S [auth C],  T [auth D],  U [auth D],  W [auth E]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
J [auth A], L [auth A], R [auth C], V [auth E]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.243 
  • R-Value Work: 0.198 
  • R-Value Observed: 0.200 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M34YWE Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.32α = 89.12
b = 93.07β = 78.55
c = 139.43γ = 89.85
Software Package:
Software NamePurpose
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
BALBESphasing
ARPmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-04-08
    Type: Initial release