4YSI

Structure of USP7 with a novel viral protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.02 Å
  • R-Value Free: 0.160 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of USP7 with a novel viral protein

Chavoshi, S.Egorova, O.Lacdao, I.K.Farhadi, S.Sheng, Y.Saridakis, V.

(2016) J.Biol.Chem. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin carboxyl-terminal hydrolase 7
A
143Homo sapiensMutation(s): 0 
Gene Names: USP7 (HAUSP)
EC: 3.4.19.12
Find proteins for Q93009 (Homo sapiens)
Go to Gene View: USP7
Go to UniProtKB:  Q93009
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
SER-PRO-GLY-GLU-GLY-PRO-SER-GLY
B
8Human herpesvirus 8 type P (isolate GK18)Mutation(s): 0 
Gene Names: vIRF-1
Find proteins for F5HF68 (Human herpesvirus 8 type P (isolate GK18))
Go to UniProtKB:  F5HF68
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.02 Å
  • R-Value Free: 0.160 
  • R-Value Work: 0.154 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 69.975α = 90.00
b = 69.975β = 90.00
c = 45.444γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
RESOLVEphasing
Aimlessdata scaling
MOSFLMdata reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health ResearchCanada106583

Revision History 

  • Version 1.0: 2016-02-03
    Type: Initial release
  • Version 1.1: 2017-08-23
    Type: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.2: 2017-09-27
    Type: Author supporting evidence