4YRZ

Crystal Structure of LuxP In Complex With L-xylulofuranose-1,2-borate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.174 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.0 of the entry. See complete history


Literature

Discovery of Glycomimetic Agonists from a Protocell Metabolism, Proto-natural Product Libraries

Sattin, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Autoinducer 2-binding periplasmic protein LuxPA, B345Vibrio harveyiMutation(s): 0 
Gene Names: luxP
UniProt
Find proteins for P54300 (Vibrio harveyi)
Explore P54300 
Go to UniProtKB:  P54300
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
A2B (Subject of Investigation/LOI)
Query on A2B

Download Ideal Coordinates CCD File 
C [auth A], D [auth B]L-xylulofuranose-1,2-borate
C5 H10 B O7
HLBKGCVZIOGTKY-VPENINKCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.171 
  • R-Value Observed: 0.174 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.5α = 90
b = 85.036β = 90
c = 130.98γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment  



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Engineering and Physical Sciences Research CouncilUnited KingdomEP/D023343/1, EP/D023327/1, EP/E000614/1
Royal SocietyUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-23
    Type: Initial release
  • Version 2.0: 2017-09-13
    Changes: Advisory, Atomic model, Author supporting evidence, Derived calculations