Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds
Elkins, P.A., Bonnette, W.G., Stuckey, J.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
tRNA (guanine-N(1)-)-methyltransferase | 254 | Haemophilus influenzae Rd KW20 | Mutation(s): 0  Gene Names: trmD, HI_0202 EC: 2.1.1.228 | ||
UniProt | |||||
Find proteins for P43912 (Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)) Explore P43912  Go to UniProtKB:  P43912 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P43912 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
4H8 Query on 4H8 | B [auth A] | 4-amino-2-[(2,2-dimethylpropyl)amino]pyrimidine-5-carboxamide C10 H17 N5 O PYEPYUBHFUICHO-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 93.848 | α = 90 |
b = 93.848 | β = 90 |
c = 178.068 | γ = 120 |
Software Name | Purpose |
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HKL-2000 | data collection |
HKL-2000 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |