4YIL

OYE1 W116A COMPLEXED WITH (Z)-METHYL 3-CYANO-3-(4-FLUOROPHENYL)ACRYLATE IN A NON PRODUCTIVE BINDING MODE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.461 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.165 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Opposite Enantioselectivity in the Bioreduction of (Z)-beta-Aryl-beta-cyanoacrylates Mediated by the Tryptophan 116 Mutants of Old Yellow Enzyme 1: Synthetic Approach to (R)- and (S)-beta-Aryl-gamma-lactams

Brenna, E.Crotti, M.Gatti, F.G.Monti, D.Parmeggiani, F.Powell III, R.W.Santangelo, S.Stewart, J.D.

(2015) Adv.Synth.Catal. 357: 1849-1860.


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NADPH dehydrogenase 1
A
397Saccharomyces pastorianusMutation(s): 1 
Gene Names: OYE1
EC: 1.6.99.1
Find proteins for Q02899 (Saccharomyces pastorianus)
Go to UniProtKB:  Q02899
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4D3
Query on 4D3

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Download CCD File 
A
methyl (2Z)-3-cyano-3-(4-fluorophenyl)prop-2-enoate
C11 H8 F N O2
SKAOSLYCNKRRPS-RMKNXTFCSA-N
 Ligand Interaction
NA
Query on NA

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Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
FMN
Query on FMN

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Download CCD File 
A
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.461 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.165 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 141.395α = 90.00
b = 141.395β = 90.00
c = 42.820γ = 90.00
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-01-20
    Type: Initial release