Download MendeleyStructure of a single tryptophan mutant of Acetobacter aceti PurE
Sullivan, K.L., Tranchimand, S., Kappock, T.J.To be published.
4YCB
Structure of a single tryptophan mutant of Acetobacter aceti PurE
- PDB DOI: https://doi.org/10.2210/pdb4YCB/pdb
- Classification: ISOMERASE
- Organism(s): Acetobacter aceti 1023
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2015-02-19 Released: 2016-02-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.149
- R-Value Work: 0.140
- R-Value Observed: 0.141
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| N5-carboxyaminoimidazole ribonucleotide mutase | 183 | Acetobacter aceti 1023 | Mutation(s): 2 Gene Names: purE, AZ09_02690 EC: 5.4.99.18 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PGF Query on PGF | K [auth B] | 2,5,8,11-TETRAOXATRIDECANE C9 H20 O4 JRRDISHSXWGFRF-UHFFFAOYSA-N |  | ||
| SO4 Query on SO4 | F [auth A], L [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | D [auth A], E [auth A], H [auth B], I [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | C [auth A], G [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| K Query on K | J [auth B] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.149
- R-Value Work: 0.140
- R-Value Observed: 0.141
- Space Group: I 4 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.803 | α = 90 |
| b = 99.803 | β = 90 |
| c = 164.409 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2016-02-24 Deposition Author(s): Kappock, T.J., Sullivan, K.L., Mullins, E.A.
Revision History (Full details and data files)
- Version 1.0: 2016-02-24
Type: Initial release - Version 1.1: 2016-06-01
Changes: Other - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
