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Download EndnoteFactor Xa complex with GTC000398
Convery, M.A., Young, R.J., Senger, S., Hamblin, J.N., Chan, C., Toomey, J.R., Watson, N.S.To be published.
4Y71
Factor Xa complex with GTC000398
- DOI: 10.2210/pdb4Y71/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Deposited: 2015-02-13 Released: 2015-09-30
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.240
- R-Value Work: 0.197
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Coagulation factor X | A | 254 | Homo sapiens | Mutation(s): 0 Gene Names: F10 EC: 3.4.21.6 |
Find proteins for P00742 (Homo sapiens) Go to Gene View: F10 Go to UniProtKB: P00742 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Coagulation factor X | B | 134 | Homo sapiens | Mutation(s): 0 Gene Names: F10 EC: 3.4.21.6 |
Find proteins for P00742 (Homo sapiens) Go to Gene View: F10 Go to UniProtKB: P00742 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CA Query on CA | A | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| 48W Query on 48W | A | 6-chloro-N-{(3S)-1-[(2S)-1-(4-methyl-5-oxo-1,4-diazepan-1-yl)-1-oxopropan-2-yl]-2-oxopyrrolidin-3-yl}naphthalene-2-sulfonamide GTC000398 C23 H27 Cl N4 O5 S USQCUKQZXOWUDF-YWZLYKJASA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.8 Å
- R-Value Free: 0.240
- R-Value Work: 0.197
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 56.759 | α = 90.00 |
| b = 72.845 | β = 90.00 |
| c = 78.649 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
| REFMAC | phasing |
| DENZO | data reduction |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2015-02-13
- Released Date: 2015-09-30
- Deposition Author(s): Convery, M.A., Young, R.J., Senger, S., Hamblin, J.N., Chan, C., Toomey, J.R., Watson, N.S.
Revision History
- Version 1.0: 2015-09-30
Type: Initial release
