4XCX

METHYLTRANSFERASE DOMAIN OF SMALL RNA 2'-O-METHYLTRANSFERASE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of human C1ORF59 in complex with SAH

Walker, J.R.Zeng, H.Dong, A.Li, Y.Wernimont, A.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Brown, P.J.Wu, H.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Small RNA 2'-O-methyltransferaseA249Homo sapiensMutation(s): 0 
Gene Names: HENMT1C1orf59
EC: 2.1.1
Find proteins for Q5T8I9 (Homo sapiens)
Explore Q5T8I9 
Go to UniProtKB:  Q5T8I9
NIH Common Fund Data Resources
PHAROS  Q5T8I9
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download Ideal Coordinates CCD File 
A
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.84 Å
  • R-Value Free: 0.249 
  • R-Value Work: 0.225 
  • R-Value Observed: 0.226 
  • Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 166.025α = 90
b = 166.025β = 90
c = 74.478γ = 120
Software Package:
Software NamePurpose
HKL-3000data reduction
BUSTER-TNTrefinement
PDB_EXTRACTdata extraction
HKL-3000data scaling
BALBESphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-01-14
    Type: Initial release
  • Version 1.1: 2015-02-11
    Changes: Database references
  • Version 1.2: 2015-02-25
    Changes: Database references
  • Version 1.3: 2018-01-24
    Changes: Database references, Derived calculations, Source and taxonomy, Structure summary