4XBK

2-deoxyribose-5-phosphate aldolase from Lactobacillus brevis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Efficient synthesis of a statin precursor in high space-time yield by a new aldehyde-tolerant aldolase identified from Lactobacillus brevis

Jiao, X.-C.Pan, J.Xu, G.-C.Kong, X.-D.Chen, Q.Zhang, Z.-J.Xu, J.-H.

(2015) Catal Sci Technol 5: 4048-4054


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Deoxyribose-phosphate aldolaseA, B265Lactobacillus brevis ATCC 14869 = DSM 20054Mutation(s): 0 
Gene Names: deoCHMPREF0495_01319
EC: 4.1.2.4
UniProt
Find proteins for U2PI02 (Lactobacillus brevis ATCC 14869 = DSM 20054)
Explore U2PI02 
Go to UniProtKB:  U2PI02
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACY
Query on ACY

Download Ideal Coordinates CCD File 
C [auth B], D [auth B], E [auth B]ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.162 
  • R-Value Observed: 0.163 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 96.882α = 90
b = 96.882β = 90
c = 119.593γ = 90
Software Package:
Software NamePurpose
HKL-2000data reduction
HKL-2000data processing
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000phasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and TechnologyChinaNo. 21276082

Revision History  (Full details and data files)

  • Version 1.0: 2015-11-04
    Type: Initial release