4X57

Structure of an Arabidopsis E2 / Membrane-anchored Ubiquitin-fold Protein Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.221 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structure of an Arabidopsis E2 / Membrane-anchored Ubiquitin-fold ProteinComplex

Korolev, S.Koroleva, O.Lu, X.Downes, B.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 8
A, C
179Arabidopsis thalianaMutation(s): 0 
Gene Names: UBC8 (UBC4A)
EC: 2.3.2.23
Find proteins for P35131 (Arabidopsis thaliana)
Go to UniProtKB:  P35131
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Membrane-anchored ubiquitin-fold protein 3
B, D
138Arabidopsis thalianaMutation(s): 0 
Gene Names: MUB3
Find proteins for Q9SW27 (Arabidopsis thaliana)
Go to UniProtKB:  Q9SW27
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, C, D
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.221 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 135.716α = 90.00
b = 135.716β = 90.00
c = 202.134γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM096279

Revision History 

  • Version 1.0: 2016-01-20
    Type: Initial release
  • Version 1.1: 2017-09-13
    Type: Author supporting evidence, Derived calculations
  • Version 1.2: 2019-12-25
    Type: Author supporting evidence