4WY9 | pdb_00004wy9

Crystal structure of the periplasmic sensory domain of the Campylobacter jejuni chemoreceptor Tlp1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free: 
    0.154 (Depositor), 0.162 (DCC) 
  • R-Value Work: 
    0.117 (Depositor), 0.121 (DCC) 
  • R-Value Observed: 
    0.119 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

The crystal structure of the tandem-PAS sensing domain of Campylobacter jejuni chemoreceptor Tlp1 suggests indirect mechanism of ligand recognition.

Machuca, M.A.Liu, Y.C.Beckham, S.A.Gunzburg, M.J.Roujeinikova, A.

(2016) J Struct Biol 194: 205-213

  • DOI: https://doi.org/10.1016/j.jsb.2016.02.019
  • Primary Citation Related Structures: 
    4WY9

  • PubMed Abstract: 

    Chemotaxis and motility play an important role in the colonisation of avian and human hosts by Campylobacter jejuni. Chemotactic recognition of extracellular signals is mediated by the periplasmic sensing domain of methyl-accepting chemotactic proteins (membrane-embedded receptors). In this work, we report a high-resolution structure of the periplasmic sensing domain of transducer-like protein 1 (Tlp1), an aspartate receptor of C. jejuni. Crystallographic analysis revealed that it contains two Per-Arnt-Sim (PAS) subdomains. An acetate and chloride ions (both from the crystallisation buffer) were observed bound to the membrane-proximal and membrane-distal PAS subdomains, respectively. Surprisingly, despite being crystallised in the presence of aspartate, the structure did not show any electron density corresponding to this amino acid. Furthermore, no binding between the sensing domain of Tlp1 and aspartate was detected by microcalorimetric experiments. These structural and biophysical data suggest that Tlp1 does not sense aspartate directly; instead, ligand recognition is likely to occur indirectly via an as yet unidentified periplasmic binding protein.


  • Organizational Affiliation
    • Infection and Immunity Program, Monash Biomedicine Discovery Institute, Australia; Department of Microbiology, Monash University, Clayton, Victoria 3800, Australia.

Macromolecule Content 

  • Total Structure Weight: 33.34 kDa 
  • Atom Count: 2,878 
  • Modeled Residue Count: 285 
  • Deposited Residue Count: 297 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Putative MCP-type signal transduction protein297Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819Mutation(s): 0 
Gene Names: Cj1506c
UniProt
Find proteins for Q0P8B2 (Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168))
Explore Q0P8B2 
Go to UniProtKB:  Q0P8B2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ0P8B2
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.40 Å
  • R-Value Free:  0.154 (Depositor), 0.162 (DCC) 
  • R-Value Work:  0.117 (Depositor), 0.121 (DCC) 
  • R-Value Observed: 0.119 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.26α = 92.52
b = 43.32β = 111.38
c = 50.9γ = 114.73
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Australian Research Council (ARC)AustraliaDP1094619

Revision History  (Full details and data files)

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2016-03-30
    Changes: Database references
  • Version 1.2: 2020-01-01
    Changes: Author supporting evidence, Data collection, Database references, Derived calculations
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references
  • Version 1.4: 2026-03-04
    Changes: Refinement description, Structure summary