4WOZ

Crystal Structures of CdNal from Clostridium difficile in complex with mannosamine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structures of CdNal from Clostridium difficile in complex with mannosamine

Liu, W.D.Guo, R.T.Cui, Y.F.Chen, X.Wu, Q.Q.Zhu, D.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
N-acetylneuraminate lyase
A, B, C, D, E, F, G, H
302Clostridioides difficile NAP08Mutation(s): 0 
Gene Names: nanA
EC: 4.1.3.3
Find proteins for D5Q364 (Clostridioides difficile NAP08)
Go to UniProtKB:  D5Q364
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN9
Query on MN9

Download SDF File 
Download CCD File 
B, F
2-(ACETYLAMINO)-2-DEOXY-D-MANNOSE
C8 H15 N O6
MBLBDJOUHNCFQT-WCTZXXKLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.188 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 81.476α = 90.00
b = 121.604β = 96.12
c = 121.065γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
CNSrefinement
HKL-2000data reduction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina21072151
National Natural Science Foundation of ChinaChina21102100
National Basic Research Program of ChinaChina2011CB710801

Revision History 

  • Version 1.0: 2015-10-21
    Type: Initial release