4WJW | pdb_00004wjw

Crystal Structure of the Chs5-Chs6 Exomer Cargo Adaptor Complex Bound to portion of Chs3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 
    0.211 (Depositor), 0.217 (DCC) 
  • R-Value Work: 
    0.180 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 
    0.181 (Depositor) 

Starting Model: experimental
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This is version 1.2 of the entry. See complete history

Literature

Distinct N-terminal regions of the exomer secretory vesicle cargo Chs3 regulate its trafficking itinerary.

Weiskoff, A.M.Fromme, J.C.

(2014) Front Cell Dev Biol 2: 47-47

  • DOI: https://doi.org/10.3389/fcell.2014.00047
  • Primary Citation Related Structures: 
    4WJW

  • PubMed Abstract: 

    Cells transport integral membrane proteins between organelles by sorting them into vesicles. Cargo adaptors act to recognize sorting signals in transmembrane cargos and to interact with coat complexes that aid in vesicle biogenesis. No coat proteins have yet been identified that generate secretory vesicles from the trans-Golgi network (TGN) to the plasma membrane, but the exomer complex has been identified as a cargo adaptor complex that mediates transport of several proteins in this pathway. Chs3, the most well-studied exomer cargo, cycles between the TGN and the plasma membrane in synchrony with the cell cycle, providing an opportunity to study regulation of proteins that cycle in response to signaling. Here we show that different segments of the Chs3 N-terminus mediate distinct trafficking steps. Residues 10-27, known to mediate retention, also appear to play a role in internalization. Residues 28-52 are involved in transport to the plasma membrane and recycling out of endosomes to prevent degradation in the vacuole. We also present the crystal structure of residues 10-27 bound to the exomer complex, suggesting different cargo adaptors could compete for binding to this segment, providing a potential mechanism for regulation.


  • Organizational Affiliation
    • Department of Molecular Biology and Genetics, Weill Institute for Cell and Molecular Biology, Cornell University Ithaca, NY, USA.

Macromolecule Content 

  • Total Structure Weight: 98.98 kDa 
  • Atom Count: 6,098 
  • Modeled Residue Count: 755 
  • Deposited Residue Count: 857 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chitin biosynthesis protein CHS577Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CHS5CAL3YLR330WL8543.18
UniProt
Find proteins for Q12114 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12114 
Go to UniProtKB:  Q12114
Entity Groups
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UniProt GroupQ12114
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Chitin biosynthesis protein CHS6761Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: CHS6CSD3YJL099WJ0838
UniProt
Find proteins for P40955 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40955 
Go to UniProtKB:  P40955
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UniProt GroupP40955
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
CHITIN SYNTHASE 3C [auth P]19Saccharomyces cerevisiaeMutation(s): 0 
EC: 2.4.1.16
UniProt
Find proteins for P29465 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P29465 
Go to UniProtKB:  P29465
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP29465
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free:  0.211 (Depositor), 0.217 (DCC) 
  • R-Value Work:  0.180 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 0.181 (Depositor) 
Space Group: P 63 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 218.613α = 90
b = 218.613β = 90
c = 137.848γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-10-15
    Type: Initial release
  • Version 1.1: 2014-12-03
    Changes: Database references
  • Version 1.2: 2023-09-27
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description, Source and taxonomy