Download MendeleyHigh-resolution structure of Synaptotagmin 1 C2A
Sutton, R.B.To be published.
4WEE
High-resolution structure of Synaptotagmin 1 C2A
- PDB DOI: https://doi.org/10.2210/pdb4WEE/pdb
- Classification: METAL BINDING PROTEIN
- Organism(s): Rattus norvegicus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-09-09 Released: 2014-10-01
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.89 Å
- R-Value Free: 0.164
- R-Value Work: 0.149
- R-Value Observed: 0.150
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Re-refinement Note
This entry reflects an alternative modeling of the original data in: 1RSY
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Synaptotagmin-1 | 144 | Rattus norvegicus | Mutation(s): 0 Gene Names: Syt1 |  | |
UniProt | |||||
Find proteins for P21707 (Rattus norvegicus) Explore P21707 Go to UniProtKB: P21707 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P21707 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | I [auth A], J [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| NA Query on NA | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.89 Å
- R-Value Free: 0.164
- R-Value Work: 0.149
- R-Value Observed: 0.150
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.738 | α = 90 |
| b = 38.547 | β = 97.94 |
| c = 44.295 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| SCALEPACK | data scaling |
| PHASER | phasing |
| Coot | model building |
| PHENIX | refinement |
Entry History
Deposition Data
- Released Date: 2014-10-01 Deposition Author(s): Sutton, R.B., Fuson, K.L.
Revision History (Full details and data files)
- Version 1.0: 2014-10-01
Type: Initial release - Version 1.1: 2015-09-30
Changes: Database references, Other - Version 1.2: 2023-09-27
Changes: Data collection, Database references, Derived calculations, Refinement description
