4V68

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

GTPase activation of elongation factor EF-Tu by the ribosome during decoding

Schuette, J.C.Murphy, F.V.Kelley, A.C.Weir, J.R.Giesebrecht, J.Connell, S.R.Loerke, J.Mielke, T.Zhang, W.Penczek, P.A.Ramakrishnan, V.Spahn, C.M.

(2009) Embo J. 28: 755-765

  • DOI: 10.1038/emboj.2009.26
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • We have used single-particle reconstruction in cryo-electron microscopy to determine a structure of the Thermus thermophilus ribosome in which the ternary complex of elongation factor Tu (EF-Tu), tRNA and guanine nucleotide has been trapped on the ri ...

    We have used single-particle reconstruction in cryo-electron microscopy to determine a structure of the Thermus thermophilus ribosome in which the ternary complex of elongation factor Tu (EF-Tu), tRNA and guanine nucleotide has been trapped on the ribosome using the antibiotic kirromycin. This represents the state in the decoding process just after codon recognition by tRNA and the resulting GTP hydrolysis by EF-Tu, but before the release of EF-Tu from the ribosome. Progress in sample purification and image processing made it possible to reach a resolution of 6.4 A. Secondary structure elements in tRNA, EF-Tu and the ribosome, and even GDP and kirromycin, could all be visualized directly. The structure reveals a complex conformational rearrangement of the tRNA in the A/T state and the interactions with the functionally important switch regions of EF-Tu crucial to GTP hydrolysis. Thus, the structure provides insights into the molecular mechanism of signalling codon recognition from the decoding centre of the 30S subunit to the GTPase centre of EF-Tu.


    Organizational Affiliation

    Institut f├╝r Medizinische Physik und Biophysik, Charite-Universit├Ątsmedizin Berlin, Berlin, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S2
AB
235Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsB (rps2)
Find proteins for P80371 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80371
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S4
AD
208Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsD (rps4)
Find proteins for P80373 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80373
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S5
AE
151Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsE
Find proteins for Q5SHQ5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ5
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S6
AF
101Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsF
Find proteins for Q5SLP8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP8
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S8
AH
138Thermus aquaticusMutation(s): 0 
Gene Names: rpsH
Find proteins for A0A0M9AFS9 (Thermus aquaticus)
Go to UniProtKB:  A0A0M9AFS9
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S11
AK
119Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsK (rps11)
Find proteins for P80376 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80376
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S12
AL
125Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsL
Find proteins for Q5SHN3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN3
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S15
AO
88Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsO
Find proteins for Q5SJ76 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJ76
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S16
AP
84Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsP
Find proteins for Q5SJH3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJH3
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S17
AQ
100Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsQ
Find proteins for P0DOY7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P0DOY7
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S18
AR
70Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsR
Find proteins for Q5SLQ0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLQ0
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S20
AT
99Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsT (rps20)
Find proteins for P80380 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80380
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S3
AC
207Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsC (rps3)
Find proteins for P80372 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80372
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S7
AG
155Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsG (rps7)
Find proteins for P17291 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P17291
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S9
AI
127Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)Mutation(s): 0 
Gene Names: rpsI (rps9)
Find proteins for P62669 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Go to UniProtKB:  P62669
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S10
AJ
99Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsJ
Find proteins for Q5SHN7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN7
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S13
AM
125Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsM (rps13)
Find proteins for P80377 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80377
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S14
AN
60Thermus aquaticusMutation(s): 0 
Gene Names: rpsZ (rpsN)
Find proteins for A0A0N0BLP2 (Thermus aquaticus)
Go to UniProtKB:  A0A0N0BLP2
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein S19
AS
79Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsS
Find proteins for Q5SHP2 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP2
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
30S ribosomal protein Thx
AU
25Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpsU
Find proteins for Q5SIH3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SIH3
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
Elongation factor Tu-A
AZ
405Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: tufB
Find proteins for P60339 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60339
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L27
B0
85Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmA
Find proteins for P60493 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60493
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L28
B1
89Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmB
Find proteins for P60494 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60494
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L29
B2
51Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmC
Find proteins for Q5SHP6 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP6
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L30
B3
60Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmD
Find proteins for Q5SHQ6 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ6
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L31
B4
50Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmE
Find proteins for Q5SJE1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SJE1
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L32
B5
59Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmF (rpl32)
Find proteins for P80339 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80339
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L33
B6
45Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmG (rpl33)
Find proteins for P35871 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P35871
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L34
B7
49Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rpmH (rpl34)
Find proteins for P80340 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P80340
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L35
B8
64Thermus thermophilusMutation(s): 0 
Gene Names: rpmI (rpl35)
Find proteins for P80341 (Thermus thermophilus)
Go to UniProtKB:  P80341
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L36
B9
35Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)Mutation(s): 0 
Gene Names: rpmJ
Find proteins for Q72I28 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Go to UniProtKB:  Q72I28
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L1
BC
191Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplA
Find proteins for Q5SLP7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLP7
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L2
BD
272Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplB
Find proteins for P60405 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60405
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L3
BE
205Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplC
Find proteins for Q5SHN8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN8
Entity ID: 43
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L4
BF
208Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplD
Find proteins for Q5SHN9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHN9
Entity ID: 44
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L5
BG
181Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplE
Find proteins for Q5SHQ0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ0
Entity ID: 45
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L6
BH
160Thermus aquaticusMutation(s): 0 
Gene Names: rplF
Find proteins for A0A0M9ADP1 (Thermus aquaticus)
Go to UniProtKB:  A0A0M9ADP1
Entity ID: 46
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L9
BI
146Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplI
Find proteins for Q5SLQ1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SLQ1
Entity ID: 47
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L11
BL
138Thermus thermophilusMutation(s): 0 
Gene Names: rplK (rpl11)
Find proteins for P36238 (Thermus thermophilus)
Go to UniProtKB:  P36238
Entity ID: 48
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L13
BN
139Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplM
Find proteins for P60488 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60488
Entity ID: 49
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L14
BO
122Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplN
Find proteins for Q5SHP8 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP8
Entity ID: 50
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L15
BP
146Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplO
Find proteins for Q5SHQ7 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ7
Entity ID: 51
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L16
BQ
136Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplP
Find proteins for P60489 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60489
Entity ID: 52
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L17
BR
117Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplQ (rpl17)
Find proteins for Q9Z9H5 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q9Z9H5
Entity ID: 53
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L18
BS
99Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplR
Find proteins for Q5SHQ4 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHQ4
Entity ID: 54
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L19
BT
138Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplS
Find proteins for P60490 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60490
Entity ID: 55
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L20
BU
117Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplT
Find proteins for P60491 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60491
Entity ID: 56
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L21
BV
101Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplU
Find proteins for P60492 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  P60492
Entity ID: 57
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L22
BW
113Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplV
Find proteins for Q5SHP3 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP3
Entity ID: 58
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L23
BX
93Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplW
Find proteins for Q5SHP0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP0
Entity ID: 59
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L24
BY
101Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplX
Find proteins for Q5SHP9 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHP9
Entity ID: 60
MoleculeChainsSequence LengthOrganismDetails
50S ribosomal protein L25
BZ
177Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Mutation(s): 0 
Gene Names: rplY (rpl25, rptL5)
Find proteins for Q5SHZ1 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Go to UniProtKB:  Q5SHZ1
Entity ID: 1
MoleculeChainsLengthOrganism
16S rRNAAA1504Thermus thermophilus
Entity ID: 22
MoleculeChainsLengthOrganism
P-SITE TRNAAV77Thermus thermophilus
Entity ID: 23
MoleculeChainsLengthOrganism
SYNTHETIC MRNAAX6N/A
Entity ID: 24
MoleculeChainsLengthOrganism
E-SITE TRNAAW76Thermus thermophilus
Entity ID: 25
MoleculeChainsLengthOrganism
AT-SITE TRNAAY72Thermus thermophilus
Entity ID: 26
MoleculeChainsLengthOrganism
MRNA CODONA03N/A
Entity ID: 38
MoleculeChainsLengthOrganism
23S rRNABA2852Thermus thermophilus
Entity ID: 39
MoleculeChainsLengthOrganism
5S rRNABB119Thermus thermophilus
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PHA
Query on PHA

Download SDF File 
Download CCD File 
AY
PHENYLALANINAL
C9 H11 N O
CQIUZHAQYHXKRY-VIFPVBQESA-N
 Ligand Interaction
GDP
Query on GDP

Download SDF File 
Download CCD File 
AZ
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
BME
Query on BME

Download SDF File 
Download CCD File 
AZ
BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
 Ligand Interaction
MAU
Query on MAU

Download SDF File 
Download CCD File 
AZ
N-METHYL KIRROMYCIN
AURODOX; 1-METHYLMOCIMYCIN; ANTIBIOTIC X-5108; GOLDINODOX; GOLDINOMYCIN
C44 H62 N2 O12
NTAHMPNXQOYXSX-WKSONYIQSA-N
 Ligand Interaction
Modified Residues  10 Unique
IDChainsTypeFormula2D DiagramParent
PSU
Query on PSU
AY
RNA LINKINGC9 H13 N2 O9 PU
5MC
Query on 5MC
AY
RNA LINKINGC10 H16 N3 O8 PC
M2G
Query on M2G
AY
RNA LINKINGC12 H18 N5 O8 PG
1MA
Query on 1MA
AY
RNA LINKINGC11 H16 N5 O7 PA
OMC
Query on OMC
AY
RNA LINKINGC10 H16 N3 O8 PC
2MG
Query on 2MG
AY
RNA LINKINGC11 H16 N5 O8 PG
OMG
Query on OMG
AY
RNA LINKINGC11 H16 N5 O8 PG
7MG
Query on 7MG
AY
RNA LINKINGC11 H18 N5 O8 PG
YG
Query on YG
AY
RNA LINKINGC21 H29 N6 O12 PG
5MU
Query on 5MU
AV, AY
RNA LINKINGC10 H15 N2 O9 PU
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.4 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-07-09
    Type: Initial release
  • Version 1.1: 2014-12-10
    Type: Other
  • Version 1.2: 2015-03-25
    Type: Other