4UZM

Shotgun proteolysis: A practical application


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: NO VIOLATIONS 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Solution Structure of a Soluble Fragment Derived from a Membrane Protein by Shotgun Proteolysis.

Allen, M.D.Christie, M.Jones, P.Porebski, B.T.Roome, B.Freund, S.M.Buckle, A.M.Bycroft, M.Christ, D.

(2015) Protein Eng.Des.Sel. 28: 445

  • DOI: 10.1093/protein/gzv021

  • PubMed Abstract: 
  • We have previously reported a phage display method for the identification of protein domains on a genome-wide scale (shotgun proteolysis). Here we present the solution structure of a fragment of the Escherichia coli membrane protein yrfF, as identifi ...

    We have previously reported a phage display method for the identification of protein domains on a genome-wide scale (shotgun proteolysis). Here we present the solution structure of a fragment of the Escherichia coli membrane protein yrfF, as identified by shotgun proteolysis, and determined by NMR spectroscopy. Despite the absence of computational predictions, the fragment formed a well-defined beta-barrel structure, distantly falling within the OB-fold classification. Our results highlight the potential of high-throughput experimental approaches for the identification of protein domains for structural studies.


    Organizational Affiliation

    MRC Laboratory of Molecular Biology, Hills Road, Cambridge CB2 0QH, UK.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PUTATIVE MEMBRANE PROTEIN IGAA HOMOLOG
A
120Escherichia coli (strain K12)Gene Names: yrfF
Find proteins for P45800 (Escherichia coli (strain K12))
Go to UniProtKB:  P45800
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: NO VIOLATIONS 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-09-17
    Type: Initial release
  • Version 1.1: 2014-09-24
    Type: Atomic model
  • Version 1.2: 2015-04-29
    Type: Database references, Other
  • Version 1.3: 2015-10-21
    Type: Database references
  • Version 1.4: 2016-04-27
    Type: Atomic model, Other