4UZM

Shotgun proteolysis: A practical application


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: NO VIOLATIONS 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Solution Structure of a Soluble Fragment Derived from a Membrane Protein by Shotgun Proteolysis.

Allen, M.D.Christie, M.Jones, P.Porebski, B.T.Roome, B.Freund, S.M.Buckle, A.M.Bycroft, M.Christ, D.

(2015) Protein Eng Des Sel 28: 445

  • DOI: 10.1093/protein/gzv021
  • Primary Citation of Related Structures:  
    4UZM

  • PubMed Abstract: 
  • We have previously reported a phage display method for the identification of protein domains on a genome-wide scale (shotgun proteolysis). Here we present the solution structure of a fragment of the Escherichia coli membrane protein yrfF, as identified by shotgun proteolysis, and determined by NMR spectroscopy ...

    We have previously reported a phage display method for the identification of protein domains on a genome-wide scale (shotgun proteolysis). Here we present the solution structure of a fragment of the Escherichia coli membrane protein yrfF, as identified by shotgun proteolysis, and determined by NMR spectroscopy. Despite the absence of computational predictions, the fragment formed a well-defined beta-barrel structure, distantly falling within the OB-fold classification. Our results highlight the potential of high-throughput experimental approaches for the identification of protein domains for structural studies.


    Organizational Affiliation

    Department of Immunology, Garvan Institute of Medical Research, 384 Victoria Street, Darlinghurst, Sydney, NSW 2010, Australia Faculty of Medicine, St Vincent's Clinical School, The University of New South Wales, Darlinghurst, Sydney, NSW 2010, Australia d.christ@garvan.org.au.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PUTATIVE MEMBRANE PROTEIN IGAA HOMOLOGA120Escherichia coliMutation(s): 0 
Find proteins for P45800 (Escherichia coli (strain K12))
Explore P45800 
Go to UniProtKB:  P45800
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: NO VIOLATIONS 
  • OLDERADO: 4UZM Olderado

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-09-17
    Type: Initial release
  • Version 1.1: 2014-09-24
    Changes: Atomic model
  • Version 1.2: 2015-04-29
    Changes: Database references, Other
  • Version 1.3: 2015-10-21
    Changes: Database references
  • Version 1.4: 2016-04-27
    Changes: Atomic model, Other