4UYB

Crystal structure of SEC14-like protein 3

• PDB DOI: https://doi.org/10.2210/pdb4UYB/pdb

• Classification: TRANSPORT PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2014-08-29 Released: 2014-09-24 
• Deposition Author(s): Kopec, J., Goubin, S., Krojer, T., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.178 
• R-Value Work: 0.140 
• R-Value Observed: 0.142 

Starting Model: experimental

Literature

Crystal Structure of Sec14-Like Protein 3

Kopec, J., Goubin, S., Krojer, T., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 46.58 kDa 
• Atom Count: 4,063 
• Modelled Residue Count: 401 
• Deposited Residue Count: 401 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SEC14-LIKE PROTEIN 3	A	401	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UDX4 (Homo sapiens) Explore Q9UDX4  Go to UniProtKB:  Q9UDX4
PHAROS:  Q9UDX4 GTEx:  ENSG00000100012

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
UNL	H [auth A]	Unknown ligand LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.178 
• R-Value Work: 0.140 
• R-Value Observed: 0.142 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.243	α = 90
b = 83.243	β = 90
c = 174.363	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-09-24 
Deposition Author(s): Kopec, J., Goubin, S., Krojer, T., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

Revision History  

• Version 1.0: 2014-09-24
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Advisory, Database references
• Version 1.2: 2024-01-10
  Changes: Advisory, Data collection, Database references, Derived calculations, Other, Refinement description