4UY4

1.86 A structure of human Spindlin-4 protein in complex with histone H3K4me3 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.862 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

1.86 A Structure of Human Spindlin-4 Protein in Complex with Histone H3K4Me3 Peptide

Talon, R.Gileadi, C.Johansson, C.Burgess-Brown, N.Shrestha, L.Fairhead, M.von Delft, F.Krojer, T.Bountra, C.Arrowsmith, C.H.Edwards, A.Oppermann, U.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SPINDLIN-4
A, B
216Homo sapiensMutation(s): 0 
Gene Names: SPIN4
Find proteins for Q56A73 (Homo sapiens)
Go to Gene View: SPIN4
Go to UniProtKB:  Q56A73
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
HISTONE H3K4ME3
C, D
6Homo sapiensMutation(s): 0 
Gene Names: HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J (H3FA, H3FL, H3FC, H3FB, H3FD, H3FI, H3FH, H3FK, H3FF, H3FJ)
Find proteins for P68431 (Homo sapiens)
Go to UniProtKB:  P68431
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
M3L
Query on M3L
C, D
L-PEPTIDE LINKINGC9 H21 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.862 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 39.072α = 81.25
b = 51.690β = 89.89
c = 57.141γ = 88.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
XDSdata reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-09-24
    Type: Initial release
  • Version 1.1: 2015-08-19
    Type: Database references, Structure summary
  • Version 1.2: 2018-01-24
    Type: Database references, Structure summary