4UOR

Structure of lipoteichoic acid synthase LtaS from Listeria monocytogenes in complex with glycerol phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural and mechanistic insight into the Listeria monocytogenes two-enzyme lipoteichoic acid synthesis system.

Campeotto, I.Percy, M.G.MacDonald, J.T.Forster, A.Freemont, P.S.Grundling, A.

(2014) J Biol Chem 289: 28054-28069

  • DOI: 10.1074/jbc.M114.590570
  • Primary Citation of Related Structures:  
    4UOO, 4UOP, 4UOR

  • PubMed Abstract: 
  • Lipoteichoic acid (LTA) is an important cell wall component required for proper cell growth in many Gram-positive bacteria. In Listeria monocytogenes, two enzymes are required for the synthesis of this polyglycerolphosphate polymer. The LTA primase LtaP(Lm) initiates LTA synthesis by transferring the first glycerolphosphate (GroP) subunit onto the glycolipid anchor and the LTA synthase LtaS(Lm) extends the polymer by the repeated addition of GroP subunits to the tip of the growing chain ...

    Lipoteichoic acid (LTA) is an important cell wall component required for proper cell growth in many Gram-positive bacteria. In Listeria monocytogenes, two enzymes are required for the synthesis of this polyglycerolphosphate polymer. The LTA primase LtaP(Lm) initiates LTA synthesis by transferring the first glycerolphosphate (GroP) subunit onto the glycolipid anchor and the LTA synthase LtaS(Lm) extends the polymer by the repeated addition of GroP subunits to the tip of the growing chain. Here, we present the crystal structures of the enzymatic domains of LtaP(Lm) and LtaS(Lm). Although the enzymes share the same fold, substantial differences in the cavity of the catalytic site and surface charge distribution contribute to enzyme specialization. The eLtaS(Lm) structure was also determined in complex with GroP revealing a second GroP binding site. Mutational analysis confirmed an essential function for this binding site and allowed us to propose a model for the binding of the growing chain.


    Organizational Affiliation

    From the Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection, and a.grundling@imperial.ac.uk.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
LIPOTEICHOIC ACID SYNTHASE
A, B, C, D, E, F, G, H
A, B, C, D, E, F, G, H, I, J, K
459Listeria monocytogenes EGD-eMutation(s): 0 
Gene Names: lmo0927
EC: 2.7.8
Find proteins for Q8Y8H6 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e))
Explore Q8Y8H6 
Go to UniProtKB:  Q8Y8H6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GP9
Query on GP9

Download Ideal Coordinates CCD File 
AA [auth H] , CA [auth I] , EA [auth J] , GA [auth K] , M [auth A] , O [auth B] , Q [auth C] , S [auth D] , 
AA [auth H],  CA [auth I],  EA [auth J],  GA [auth K],  M [auth A],  O [auth B],  Q [auth C],  S [auth D],  U [auth E],  W [auth F],  Y [auth G]
(2R)-2,3-dihydroxypropyl phosphate
C3 H7 O6 P
AWUCVROLDVIAJX-GSVOUGTGSA-L
 Ligand Interaction
MG
Query on MG

Download Ideal Coordinates CCD File 
BA [auth I] , DA [auth J] , FA [auth K] , L [auth A] , N [auth B] , P [auth C] , R [auth D] , T [auth E] , 
BA [auth I],  DA [auth J],  FA [auth K],  L [auth A],  N [auth B],  P [auth C],  R [auth D],  T [auth E],  V [auth F],  X [auth G],  Z [auth H]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
TPO
Query on TPO
A , B , C , D , E , F , G , H , 
A,  B,  C,  D,  E,  F,  G,  H,  I,  J,  K
L-PEPTIDE LINKINGC4 H10 N O6 PTHR
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.246α = 90
b = 119.625β = 90
c = 472.658γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-08-27
    Type: Initial release
  • Version 1.1: 2014-09-03
    Changes: Structure summary
  • Version 1.2: 2014-10-22
    Changes: Database references
  • Version 1.3: 2018-02-28
    Changes: Database references