4U68

Crystal structure of Rhino chromodomain in complex with H3K9me3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into Rhino-mediated germline piRNA cluster formation

Yu, B.W.Cassani, M.Wang, M.Liu, M.Ma, J.Li, G.Zhang, Z.Huang, Y.

(2015) Cell Res 25: 525-528


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
RhinoA, B, C75Drosophila melanogasterMutation(s): 0 
Gene Names: 
UniProt
Find proteins for Q7JXA8 (Drosophila melanogaster)
Explore Q7JXA8 
Go to UniProtKB:  Q7JXA8
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
peptide from Histone H3.1D, E, F11Homo sapiensMutation(s): 0 
Gene Names: 
UniProt & NIH Common Fund Data Resources
Find proteins for P68431 (Homo sapiens)
Explore P68431 
Go to UniProtKB:  P68431
PHAROS:  P68431
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
M3L
Query on M3L
D, E, FL-PEPTIDE LINKINGC9 H21 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.184 
  • R-Value Observed: 0.186 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.946α = 90
b = 67.679β = 106.46
c = 79.75γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
Cootmodel building
PHENIXrefinement

Structure Validation

View Full Validation Report




Entry History & Funding Information

Deposition Data

  • Deposited Date: 2014-07-28 
  • Released Date: 2015-08-05 
  • Deposition Author(s): Yu, B.W., Huang, Y.

Funding OrganizationLocationGrant Number
Ministry of Science and Technology of ChinaChina2012CB910502
National Natural Science Foundation of ChinaChina31270774
Strategic Priority Research ProgramChinaXDB08010202

Revision History  (Full details and data files)

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2016-05-25
    Changes: Database references
  • Version 1.2: 2019-10-23
    Changes: Data collection, Derived calculations