Probing the structure and mechanism of de-N-acetylase from aggregatibacter actinomycetemcomitans
Varudharsu, D., Narayanan, R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase | 280 | Aggregatibacter actinomycetemcomitans | Mutation(s): 0  Gene Names: pgaB | ||
UniProt | |||||
Find proteins for A5HJW8 (Aggregatibacter actinomycetemcomitans) Explore A5HJW8  Go to UniProtKB:  A5HJW8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A5HJW8 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | C [auth A] D [auth A] E [auth A] G [auth B] H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CL Query on CL | F [auth A], K [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 65.24 | α = 90 |
b = 67.1 | β = 90 |
c = 101.01 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
Funding Organization | Location | Grant Number |
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United States Public Health Service | United States | DE22544 |