4TN5

Crystal Structure of Predicted Fructose Specific IIB from Escherichia Coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.230 

wwPDB Validation 3D Report Full Report



Literature

High-accuracy protein modeling and its application to molecular replacement of crystallographic phasing

Kim, M.S.Shin, D.H.Lee, J.Joo, K.Park, J.Lee, D.Berry, E.A.Jhon, G.-J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Fructose-like phosphotransferase enzyme IIB component 3AB113Escherichia coli K-12Mutation(s): 0 
Gene Names: frwDyijNb3953JW3925
EC: 2.7.1.69 (PDB Primary Data), 2.7.1.202 (UniProt)
Find proteins for P32676 (Escherichia coli (strain K12))
Explore P32676 
Go to UniProtKB:  P32676
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download CCD File 
A
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A,BL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.230 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 33.11α = 90
b = 33.11β = 90
c = 154.281γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2014-06-03 
  • Released Date: 2015-06-10 
  • Deposition Author(s): Kim, M.S., Shin, D.H.
  • This entry supersedes: 4JXD

Funding OrganizationLocationGrant Number
NRF by MEST (NCRC)Korea, Republic Of2012-0000952
NRF by MEST (CRC)Korea, Republic Of2010K000266
NRF by MESTKorea, Republic Of2008-331-C0023
NRF by MESTKorea, Republic Of2010-0003907
NRF by MESTKorea, Republic Of2013R1A1A1A05008769

Revision History 

  • Version 1.0: 2015-06-10
    Type: Initial release