Biological Assembly 1  

 3D View: Structure | 1D-3D View | Validation Report

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 5.56 kDa 
• Atom Count: 387 
• Modelled Residue Count: 50 
• Deposited Residue Count: 50 
• Unique protein chains: 1

4TGF

SOLUTION STRUCTURES OF HUMAN TRANSFORMING GROWTH FACTOR ALPHA DERIVED FROM 1*H NMR DATA

• PDB DOI: 10.2210/pdb4TGF/pdb
• BMRB: 162

• Classification: GROWTH FACTOR
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 1990-06-13 Released: 1991-10-15 
• Deposition Author(s): Kline, T.P., Brown, F.K., Brown, S.C., Jeffs, P.W., Kopple, K.D., Mueller, L.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 4 

Literature

Solution structures of human transforming growth factor alpha derived from 1H NMR data.

Kline, T.P., Brown, F.K., Brown, S.C., Jeffs, P.W., Kopple, K.D., Mueller, L.

(1990) Biochemistry 29: 7805-7813

• PubMed: 2261437 
• DOI: 10.1021/bi00486a005
• Primary Citation of Related Structures:  
  4TGF


• PubMed Abstract: 
  

The 600-MHz 1H NMR spectrum of the des-Val-Val mutant of human transforming growth factor alpha (TGF-alpha) was reassigned at pH = 6.3. The conformation space of des-Val-Val TGF-alpha was explored by distance geometry embedding followed by restrained molecular dynamics refinement using NOE distance constraints and some torsion angle constraints derived from J-couplings. Over 80 long-range NOE constraints were found by completely assigning all resolved cross-peaks in the NOESY spectra. Low NOE constraint violations were observed in structures obtained with the following three different refinement procedures: interactive annealing in DSPACE, AMBER 3.0 restrained molecular dynamics, and dynamic simulated annealing in XPLOR. The segment from Phe15 to Asp47 was found to be conformationally well-defined. Back-calculations of NOESY spectra were used to evaluate the quality of the structures. Our calculated structures resemble the ribbon diagram presentations that were recently reported by other groups. Several side-chain conformations appear to be well-defined as does the relative orientation of the C loop to the N-terminal half of the protein.

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Related Citations: 

• 1H NMR Assignment and Secondary Structural Elements of Human Transforming Growth Factor Alpha
  Brown, S.C., Mueller, L., Jeffs, P.W.
  (1989) Biochemistry 28: 593

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Organizational Affiliation: 

Smith Kline & French Laboratories, King of Prussia, Pennsylvania 19406-0939.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DES-VAL-1,VAL-2,TRANSFORMING GROWTH FACTOR, ALPHA	A	50	Homo sapiens	Mutation(s): 0  Gene Names: TGFA
UniProt & NIH Common Fund Data Resources
Find proteins for P01135 (Homo sapiens) Explore P01135  Go to UniProtKB:  P01135
PHAROS:  P01135 GTEx:  ENSG00000163235

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 4 
• OLDERADO: 4TGF Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 1990-06-13 
• Released Date: 1991-10-15 
Deposition Author(s): Kline, T.P., Brown, F.K., Brown, S.C., Jeffs, P.W., Kopple, K.D., Mueller, L.

Revision History  

• Version 1.0: 1991-10-15
  Type: Initial release
  
• Version 1.1: 2008-03-25
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-11-29
  Changes: Derived calculations, Other