4RY0

Crystal structure of ribose transporter solute binding protein RHE_PF00037 from Rhizobium etli CFN 42, TARGET EFI-511357, in complex with D-ribose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.143 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Crystal Structure of Ribose Transporter Solute Binding Protein from Rhizobium Etly, Target Efi-511357

Patskovsky, Y.Toro, R.Bhosle, R.Al Obaidi, N.Chamala, S.Scott Glenn, A.Attonito, J.D.Chowdhury, S.Lafleur, J.Siedel, R.D.Morisco, L.L.Wasserman, S.R.Hillerich, B.Love, J.Whalen, K.L.Gerlt, J.A.Almo, S.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Probable ribose ABC transporter, substrate-binding protein
A
289Rhizobium etli (strain CFN 42 / ATCC 51251)Mutation(s): 0 
Find proteins for Q2JZQ5 (Rhizobium etli (strain CFN 42 / ATCC 51251))
Go to UniProtKB:  Q2JZQ5
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
RIP
Query on RIP

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Download CCD File 
A
RIBOSE(PYRANOSE FORM)
C5 H10 O5
SRBFZHDQGSBBOR-TXICZTDVSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CA
Query on CA

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Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.181 
  • R-Value Work: 0.143 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 93.110α = 90.00
b = 36.766β = 117.91
c = 95.480γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
ARP/wARPmodel building
SHELXphasing
SHELXmodel building
HKL-3000data scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2014-12-24
    Type: Initial release
  • Version 1.1: 2014-12-31
    Type: Structure summary
  • Version 1.2: 2018-01-24
    Type: Structure summary