4RUW

The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae DSM 12333


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.281 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.138 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of endonuclease/exonuclease/phosphatase from Beutenbergia cavernae DSM 12333

Wu, R.Jedrzejczak, R.Joachimiak, A.Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endonuclease/exonuclease/phosphatase
A
440Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)Mutation(s): 0 
Find proteins for C5C3L1 (Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432))
Go to UniProtKB:  C5C3L1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.281 Å
  • R-Value Free: 0.148 
  • R-Value Work: 0.138 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 121.995α = 90.00
b = 81.121β = 95.91
c = 46.854γ = 90.00
Software Package:
Software NamePurpose
MLPHAREphasing
HKL-3000data reduction
HKL-3000data collection
PHENIXrefinement
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-24
    Type: Initial release