4RU3

Crystal structure of the cell puncturing protein Orf41 from Pseudomonas phage SN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.134 
  • R-Value Observed: 0.135 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal structure of the cell puncturing protein Orf41 from Pseudomonas phage SN

Browning, C.Shneider, M.M.Leiman, P.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
puncturing protein gp41A221Pseudomonas phage SNMutation(s): 0 
Gene Names: ORF41
Find proteins for B7VFI6 (Pseudomonas phage SN)
Explore B7VFI6 
Go to UniProtKB:  B7VFI6
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

Download CCD File 
A
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
CA
Query on CA

Download CCD File 
A
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.17 Å
  • R-Value Free: 0.150 
  • R-Value Work: 0.134 
  • R-Value Observed: 0.135 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.54α = 90
b = 84.54β = 90
c = 84.54γ = 90
Software Package:
Software NamePurpose
RemDAqdata collection
PHASERphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Advisory, Refinement description
  • Version 1.2: 2019-09-25
    Changes: Data collection, Database references, Structure summary