4ROQ

Crystal structure of Malyl-CoA lyase from Methylobacterium extorquens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.142 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Malyl-CoA lyase from Methylobacterium extorquens

Gonzalez, J.M.Marti-Arbona, R.Unkefer, C.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Malyl-CoA lyase/beta-methylmalyl-CoA lyase
A
324Methylorubrum extorquens (strain DSM 6343 / CIP 106787 / DM4)Mutation(s): 0 
Gene Names: mcl
EC: 4.1.3.24
Find proteins for C7C8D1 (Methylorubrum extorquens (strain DSM 6343 / CIP 106787 / DM4))
Go to UniProtKB:  C7C8D1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.165 
  • R-Value Work: 0.142 
  • Space Group: P 6 2 2
Unit Cell:
Length (Å)Angle (°)
a = 126.524α = 90.00
b = 126.524β = 90.00
c = 103.207γ = 120.00
Software Package:
Software NamePurpose
PHASERphasing
SCALAdata scaling
XDSdata reduction
REFMACrefinement
ADSCdata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2014-12-17
    Type: Initial release