4QT6

Crystal structure of the SPRY domain of human HERC1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of the SPRY domain of human HERC1

Hu, J.Dong, A.Guan, X.Wernimont, A.Li, Y.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Tong, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Probable E3 ubiquitin-protein ligase HERC1
A
159Homo sapiensMutation(s): 0 
Gene Names: HERC1
EC: 2.3.2.26
Find proteins for Q15751 (Homo sapiens)
Go to Gene View: HERC1
Go to UniProtKB:  Q15751
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
UNX
Query on UNX

Download SDF File 
Download CCD File 
A
UNKNOWN ATOM OR ION
X
*
 Ligand Interaction
ARF
Query on ARF

Download SDF File 
Download CCD File 
A
FORMAMIDE
C H3 N O
ZHNUHDYFZUAESO-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.170 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 99.730α = 90.00
b = 99.730β = 90.00
c = 99.730γ = 90.00
Software Package:
Software NamePurpose
SBC-Collectdata collection
SOLVEphasing
ARP/wARPmodel building
Cootmodel building
HKL-3000data reduction
RESOLVEphasing
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-01-07
    Type: Initial release
  • Version 1.1: 2017-11-22
    Type: Refinement description