Download MendeleyCrystal structure of the SPRY domain of human HERC1
Hu, J., Dong, A., Guan, X., Wernimont, A., Li, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y.To be published.
4QT6
Crystal structure of the SPRY domain of human HERC1
- PDB DOI: 10.2210/pdb4QT6/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-07-07 Released: 2015-01-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.64 Å
- R-Value Free: 0.212
- R-Value Work: 0.170
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Probable E3 ubiquitin-protein ligase HERC1 | A | 159 | Homo sapiens | Mutation(s): 0 Gene Names: HERC1 EC: 2.3.2.26 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15751 (Homo sapiens) Explore Q15751 Go to UniProtKB: Q15751 | |||||
PHAROS: Q15751 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q15751 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ARF Query on ARF | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], | FORMAMIDE C H3 N O ZHNUHDYFZUAESO-UHFFFAOYSA-N |  | Ligand Interaction | |
| UNX Query on UNX | I [auth A], J [auth A], K [auth A], L [auth A], M [auth A] | UNKNOWN ATOM OR ION X |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.64 Å
- R-Value Free: 0.212
- R-Value Work: 0.170
- R-Value Observed: 0.171
- Space Group: I 2 3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 99.73 | α = 90 |
| b = 99.73 | β = 90 |
| c = 99.73 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| SBC-Collect | data collection |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| SOLVE | phasing |
| RESOLVE | phasing |
| Coot | model building |
| ARP/wARP | model building |
Entry History
Deposition Data
- Released Date: 2015-01-07 Deposition Author(s): Dong, A., Hu, J., Guan, X., Wernimont, A., Li, Y., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)
Revision History (Full details and data files)
- Version 1.0: 2015-01-07
Type: Initial release - Version 1.1: 2017-11-22
Changes: Refinement description
