4QQ6

Crystal Structure of tudor domain of SMN1 in complex with a small organic molecule


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.173 

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Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Crystal Structure of tudor domain of SMN1 in complex with a small organic molecule

Liu, Y.Tempel, W.Iqbal, A.Walker, J.R.Bountra, C.Arrowsmith, C.H.Edwards, A.M.Brown, P.J.Min, J.Structural Genomics Consortium (SGC)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Survival motor neuron proteinA67Homo sapiensMutation(s): 0 
Gene Names: SMN1SMNSMNTSMN2SMNC
UniProt & NIH Common Fund Data Resources
Find proteins for Q16637 (Homo sapiens)
Explore Q16637 
Go to UniProtKB:  Q16637
PHAROS:  Q16637
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16637
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
36X
Query on 36X

Download Ideal Coordinates CCD File 
E [auth A]4-methyl-2,3,4,5,6,7-hexahydrodicyclopenta[b,e]pyridin-8(1H)-imine
C12 H16 N2
YOQONBCCIYETRK-UHFFFAOYSA-N
 Ligand Interaction
UNX
Query on UNX

Download Ideal Coordinates CCD File 
B [auth A],
C [auth A],
D [auth A]
UNKNOWN ATOM OR ION
X
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.173 
  • Space Group: P 65
  • Diffraction Data DOI: 10.18430/m34qq6 Protein Diffraction
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 27.789α = 90
b = 27.789β = 90
c = 112.817γ = 120
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

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Ligand Structure Quality Assessment 



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2014-08-06
    Type: Initial release