4QNS

Crystal structure of bromodomain from Plasmodium faciparum GCN5, PF3D7_0823300


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.158 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of bromodomain from Plasmodium faciparum GCN5, PF3D7_0823300

Fonseca, M.Tallant, C.Knapp, S.Loppnau, P.Hui, R.Wernimont, A.K.Arrowsmith, C.H.Edwards, A.M.Bountra, C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Histone acetyltransferase GCN5, putativeA, B, C, D106Plasmodium falciparum 3D7Mutation(s): 0 
Gene Names: gcn5PF08_0034PFNF54_02299PF3D7_0823300
EC: 2.3.1.48
UniProt
Find proteins for Q8IB67 (Plasmodium falciparum (isolate 3D7))
Explore Q8IB67 
Go to UniProtKB:  Q8IB67
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8IB67
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download Ideal Coordinates CCD File 
E [auth A],
F [auth A],
J [auth B],
K [auth B],
L [auth B],
E [auth A],
F [auth A],
J [auth B],
K [auth B],
L [auth B],
O [auth B],
P [auth C],
Q [auth C]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download Ideal Coordinates CCD File 
G [auth A],
H [auth A],
I [auth A],
M [auth B],
R [auth C],
G [auth A],
H [auth A],
I [auth A],
M [auth B],
R [auth C],
S [auth D],
T [auth D]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download Ideal Coordinates CCD File 
N [auth B],
U [auth D],
V [auth D]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.156 
  • R-Value Observed: 0.158 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.217α = 90
b = 98.871β = 109.63
c = 50.439γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2014-07-16
    Type: Initial release
  • Version 1.1: 2018-01-31
    Changes: Structure summary