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Download EndnoteAddressing a New Subpocket of TGT by Elongated 2-Amino-lin-benzoguanines
Neeb, M., Hohn, C., Heine, A., Diederich, F., Klebe, G.To be published.
4Q8W
tRNA-Guanine Transglycosylase (TGT) in Complex with 4-[2-({6-Amino-8-oxo-1H,7H,8H-imidazo[4,5-g]quinazolin-2-yl}amino)ethyl]benzoic acid
- DOI: 10.2210/pdb4Q8W/pdb
- Classification: Transferase/transferase inhibitor
- Organism(s): Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2014-04-28 Released: 2015-05-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.14 Å
- R-Value Free: 0.150
- R-Value Work: 0.134
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Queuine tRNA-ribosyltransferase | A | 388 | Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) | Mutation(s): 0 Gene Names: tgt EC: 2.4.2.29 |
Find proteins for P28720 (Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)) Go to UniProtKB: P28720 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | A | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| 2YY Query on 2YY | A | 4-{2-[(6-amino-8-oxo-7,8-dihydro-1H-imidazo[4,5-g]quinazolin-2-yl)amino]ethyl}benzoic acid C18 H16 N6 O3 TZNQMGFEWYPGDR-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.14 Å
- R-Value Free: 0.150
- R-Value Work: 0.134
- Space Group: C 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 89.830 | α = 90.00 |
| b = 64.680 | β = 96.28 |
| c = 70.680 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
