Crystal Structure of ABC Transporter Substrate-Binding Protein fromDesulfitobacterium hafniense complex with Leu
Kim, Y., Chhor, G., Endres, M., Joachimiak, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Extracellular ligand-binding receptor | 356 | Desulfitobacterium hafniense DCB-2 | Mutation(s): 0  Gene Names: Dhaf_0110 | ![]() | |
UniProt | |||||
Find proteins for B8FZ96 (Desulfitobacterium hafniense (strain DSM 10664 / DCB-2)) Explore B8FZ96  Go to UniProtKB:  B8FZ96 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B8FZ96 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LEU Query on LEU | B [auth A] | LEUCINE C6 H13 N O2 ROHFNLRQFUQHCH-YFKPBYRVSA-N | |||
EDO Query on EDO | F [auth A], G [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CA Query on CA | C [auth A], D [auth A], E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 60.425 | α = 90 |
b = 42.765 | β = 108.95 |
c = 63.577 | γ = 90 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
MOLREP | phasing |
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |