Macromolecule Content

Total Structure Weight: 83519.73
Atom Count: 4910
Residue Count: 724
Unique protein chains: 2

4Q5J

Crystal structure of SeMet derivative BRI1 in complex with BKI1

DOI: 10.2210/pdb4Q5J/pdb

Classification: TRANSFERASE/TRANSFERASE INHIBITOR
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli

Deposited: 2014-04-17 Released: 2014-10-29
Deposition Author(s): Wang, J., Wang, J., Chen, L., Wu, J.W., Wang, Z.X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.772 Å
R-Value Free: 0.259
R-Value Work: 0.201

wwPDB Validation3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insights into the negative regulation of BRI1 signaling by BRI1-interacting protein BKI1

Wang, J., Jiang, J., Wang, J., Chen, L., Fan, S.L., Wu, J.W., Wang, X., Wang, Z.X.

(2014) Cell Res. --: --

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
Protein BRASSINOSTEROID INSENSITIVE 1	A, B	341	Arabidopsis thaliana	Mutation(s): 0 Gene Names: BRI1 EC: 2.7.10.1, 2.7.11.1
Find proteins for O22476 (Arabidopsis thaliana) Go to UniProtKB: O22476
Protein Feature View Full Protein Feature View for O22476

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
BRI1 kinase inhibitor 1	F, E	21	Arabidopsis thaliana	Mutation(s): 0 Gene Names: BKI1
Find proteins for Q9FMZ0 (Arabidopsis thaliana) Go to UniProtKB: Q9FMZ0
Protein Feature View Full Protein Feature View for Q9FMZ0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
ANP Query on ANP Download SDF File Download CCD File	A, B	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C₁₀ H₁₇ N₆ O₁₂ P₃ PVKSNHVPLWYQGJ-KQYNXXCUSA-N		Ligand Interaction

Modified Residues 3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
SEP Query on SEP	A, B	L-PEPTIDE LINKING	C₃ H₈ N O₆ P		SER
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET
TPO Query on TPO	A, B	L-PEPTIDE LINKING	C₄ H₁₀ N O₆ P		THR

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.772 Å
R-Value Free: 0.259
R-Value Work: 0.201
Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 63.715	α = 90.00
b = 80.288	β = 109.55
c = 80.557	γ = 90.00

Software Package:

Software Name	Purpose
HKL-2000	data collection
HKL-2000	data reduction
PHENIX	refinement
PHASER	phasing
HKL-2000	data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2014-04-17
Released Date: 2014-10-29
Deposition Author(s): Wang, J., Wang, J., Chen, L., Wu, J.W., Wang, Z.X.

Revision History

Version 1.0: 2014-10-29
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.