4PI7
Crystal structure of S. Aureus Autolysin E in complex with disaccharide NAM-NAG
- PDB DOI: https://doi.org/10.2210/pdb4PI7/pdb
- Classification: HYDROLASE
- Organism(s): Staphylococcus aureus subsp. aureus Mu50
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No 
- Deposited: 2014-05-08 Released: 2015-10-14 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.187 
- R-Value Work: 0.156 
- R-Value Observed: 0.158 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Autolysin E | 228 | Staphylococcus aureus subsp. aureus Mu50 | Mutation(s): 0  Gene Names: SAV2307 | ||
UniProt | |||||
Find proteins for A0A0H3JT72 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3JT72  Go to UniProtKB:  A0A0H3JT72 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H3JT72 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SO4 Query on SO4 | N [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CL Query on CL | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.187 
- R-Value Work: 0.156 
- R-Value Observed: 0.158 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 46.31 | α = 90 |
b = 69.782 | β = 90 |
c = 73.58 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2015-10-14  Deposition Author(s): Mihelic, M., Renko, M., Jakas, A., Turk, D.
Revision History (Full details and data files)
- Version 1.0: 2015-10-14
Type: Initial release - Version 1.1: 2017-03-08
Changes: Database references - Version 1.2: 2017-09-27
Changes: Author supporting evidence - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-12-27
Changes: Data collection, Database references, Derived calculations, Structure summary