4PDC

Crystal structure of Cowpox virus CPXV018 (OMCP) bound to human NKG2D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 

wwPDB Validation   3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Structural basis of cowpox evasion of NKG2D immunosurveillance

Lazear, E.Sun, M.M.Wang, X.Geurs, T.L.Nelson, C.A.Campbell, J.A.Lippold, D.Krupnick, A.S.Davis, R.S.Carayannopoulos, L.N.French, A.R.Fremont, D.H.

(2019) Biorxiv 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NKG2-D type II integral membrane proteinA, B, C, D123Homo sapiensMutation(s): 0 
Gene Names: KLRK1D12S2489ENKG2D
Find proteins for P26718 (Homo sapiens)
Explore P26718 
Go to UniProtKB:  P26718
NIH Common Fund Data Resources
PHAROS:  P26718
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
CPXV018 proteinE, F150Cowpox virusMutation(s): 2 
Gene Names: CPXV018 CDS
Find proteins for Q8QN43 (Cowpox virus (strain Brighton Red))
Explore Q8QN43 
Go to UniProtKB:  Q8QN43
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.315α = 90
b = 101.11β = 91.63
c = 91.368γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI073552
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI057160

Revision History  (Full details and data files)

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2014-07-30
    Changes: Database references
  • Version 1.2: 2017-08-09
    Changes: Database references, Derived calculations, Other, Source and taxonomy
  • Version 1.3: 2017-09-13
    Changes: Author supporting evidence
  • Version 1.4: 2017-11-22
    Changes: Refinement description
  • Version 1.5: 2019-11-06
    Changes: Data collection, Database references
  • Version 1.6: 2019-12-11
    Changes: Author supporting evidence