4PDC

Crystal structure of Cowpox virus CPXV018 (OMCP) bound to human NKG2D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.6 of the entry. See complete history


Literature

Structural basis of cowpox evasion of NKG2D immunosurveillance

Lazear, E.Sun, M.M.Wang, X.Geurs, T.L.Nelson, C.A.Campbell, J.A.Lippold, D.Krupnick, A.S.Davis, R.S.Carayannopoulos, L.N.French, A.R.Fremont, D.H.

(2019) Biorxiv 


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NKG2-D type II integral membrane protein
A, B, C, D
123Homo sapiensMutation(s): 0 
Gene Names: KLRK1D12S2489ENKG2D
Find proteins for P26718 (Homo sapiens)
Go to UniProtKB:  P26718
NIH Common Fund Data Resources
PHAROS  P26718

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
CPXV018 protein
E, F
150Cowpox virusMutation(s): 2 
Gene Names: CPXV018 CDS
Find proteins for Q8QN43 (Cowpox virus (strain Brighton Red))
Go to UniProtKB:  Q8QN43
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.166 
  • R-Value Observed: 0.168 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.315α = 90
b = 101.11β = 91.63
c = 91.368γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI073552
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI057160

Revision History 

  • Version 1.0: 2014-05-21
    Type: Initial release
  • Version 1.1: 2014-07-30
    Changes: Database references
  • Version 1.2: 2017-08-09
    Changes: Database references, Derived calculations, Other, Source and taxonomy
  • Version 1.3: 2017-09-13
    Changes: Author supporting evidence
  • Version 1.4: 2017-11-22
    Changes: Refinement description
  • Version 1.5: 2019-11-06
    Changes: Data collection, Database references
  • Version 1.6: 2019-12-11
    Changes: Author supporting evidence